Jie Yang - Publications and Manuscripts

Last update: 05/11/2024

  1. Statistical Models for High-Risk Intestinal Metaplasia with DNA Methylation Profiling (2024), Epigenomes, Vol. 8, No. 2, 19, DOI: https://doi.org/10.3390/epigenomes8020019, with Tianmeng Wang and Yifei Huang.

  2. A Trigamma-free Approach for Computing Information Matrices Related to Trigamma Function (2024), Statistical Papers, DOI: https://doi.org/10.1007/s00362-024-01552-2, with Zhou Yu and Niloufar Dousti Mousavi. arXiv

  3. Smoothing Regression and Impact Measures for Accidents of Traffic Flows (2024), Journal of Applied Statistics, Volume 51, Issue 6, pages 1041-1056, DOI: https://doi.org/10.1080/02664763.2023.2175799, with Zhou Yu and Hsin-Hsiung Huang.

  4. From Poisson Observations to Fitted Negative Binomial Distribution (2024), submitted for publication, with Yingying Yang, Niloufar Dousti Mousavi, and Zhou Yu.

  5. Identifying the Most Appropriate Order for Categorical Responses (2024+), Statistica Sinica, to appear, DOI: 10.5705/ss.202022.0322, with Tianmeng Wang. arXiv

  6. Multinomial Link Models (2023), submitted for publication, with Tianmeng Wang and Liping Tong.

  7. ForLion: A New Algorithm for D-optimal Designs under General Parametric Statistical Models with Mixed Factors (2023), submitted for publication, with Yifei Huang, Keren Li, and Abhyuday Mandal.

  8. A General Equivalence Theorem for Crossover Designs under Generalized Linear Models (2023), Sankhya B, Vol. 85, 344-364, DOI: 10.1007/s13571-023-00314-8, with Jeevan Jankar and Abhyuday Mandal. arXiv

  9. An R Package AZIAD for Analysing Zero-Inflated and Zero-Altered Data (2023), Journal of Statistical Computation and Simulation, VOL. 93, NO. 16, 2801–2827, DOI: 10.1080/00949655.2023.2207020, with Niloufar Dousti Mousavi and Hani Aldirawi. arXiv

  10. Constrained D-optimal Design for Paid Research Study (2023), accepted by Statistica Sinica, DOI: 10.5705/ss.202022.0414, with Yifei Huang and Liping Tong. arXiv

  11. Categorical Data Analysis for High-Dimensional Sparse Gene Expression Data (2023), BioTech, Vol. 12, No. 3, 52, DOI: https://doi.org/10.3390/biotech12030052, with Niloufar Dousti Mousavi and Hani Aldirawi.

  12. Exploring the Transcriptional and Translational Features Using Deep Neural Networks for mRNAs Classification (2023), 2023 11th International Conference on Bioinformatics and Computational Biology (ICBCB), Hangzhou, China, 2023, pp. 7-11, DOI: 10.1109/ICBCB57893.2023.10246468, with Amira Kefi, Morris Chukhman, Vinayakumar Karintha, Sadok Bouamama, and Chunyu Liu.

  13. Variable Selection for Sparse Data with Applications to Vaginal Microbiome and Gene Expression Data (2023), Genes, Vol. 14, No. 2, 403, DOI: https://doi.org/10.3390/genes14020403, with Niloufar Dousti Mousavi and Hani Aldirawi.

  14. Analysis of Exosomal MicroRNA Dynamics in Response to Rhinovirus Challenge in a Longitudinal Case-Control Study of Asthma (2022), Viruses, Vol. 14, No. 11, 2444, DOI: https://doi.org/10.3390/v14112444, with Wangfei Wang, Anirban Sinha, René Lutter, Christian Ascoli, Peter J. Sterk, Nicole K. Nemsick, David L. Perkins, and Patricia W. Finn.

  15. Modeling Sparse Data Using MLE with Applications to Microbiome Data (2022), Journal of Statistical Theory and Practice, Volume 16, Issue 1, Article 13, DOI: https://doi.org/10.1007/s42519-021-00230-y, with Hani Aldirawi. arXiv

  16. Identification of HIV Rapid Mutations Using Differences in Nucleotide Distribution over Time (2022), Genes, Vol. 13, No. 2, 170, DOI: https://doi.org/10.3390/genes13020170, with Nan Sun and Stephen S.-T. Yau.

  17. Score-Matching Representative Approach for Big Data Analysis with Generalized Linear Models (2022), Electronic Journal of Statistics, Vol. 16, No. 1, 592-635, DOI: 10.1214/21-EJS1965, with Keren Li. arXiv

  18. A New Nonparametric Estimate of the Risk-Neutral Density with Applications to Variance Swaps (2021), Frontiers in Applied Mathematics and Statistics, 6:611878, DOI: https://doi.org/10.3389/fams.2020.611878, with Liyuan Jiang, Shuang Zhou, Keren Li, and Fangfang Wang. Supplementary Material

  19. Affine-Transformation Invariant Clustering Models (2020), Journal of Statistical Distributions and Applications, Volume 7, Article number 10, DOI: https://doi.org/10.1186/s40488-020-00111-y, with Hsin-Hsiung Huang

  20. D-optimal Designs for Multinomial Logistic Models (2020), Annals of Statistics, Volume 48, Number 2, 983-1000, DOI: https://dx.doi.org/10.1214/19-AOS1834, with Xianwei Bu and Dibyen Majumdar. arXiv

  21. Identifying zero-inflated distributions with a new R package iZID (2020), Communications in Information and Systems, Volume 20, Number 1, 23-44, DOI: https://dx.doi.org/10.4310/CIS.2020.v20.n1.a2, with Lei Wang and Hani Aldirawi. R package

  22. Optimal Crossover Designs for Generalized Linear Models (2020), Journal of Statistical Theory and Practice, Volume 14, Article number 23, DOI: https://doi.org/10.1007/s42519-020-00089-5, with Jeevan Jankar and Abhyuday Mandal. arXiv

  23. A New Probabilistic Model Based Method to Evaluate Post-Discharge Intervention on Risk of Adverse Events with Observational Data (2019), submitted for publication, with Liping Tong, Tim Arnold, Cole Erdmann, and Tina Esposito

  24. Identifying Appropriate Probabilistic Models for Sparse Discrete Omics Data (2019), 2019 IEEE EMBS International Conference on Biomedical & Health Informatics (BHI), Chicago, IL, USA, 2019, pp. 1-4, DOI: 10.1109/BHI.2019.8834661, with Hani Aldirawi and Ahmed A. Metwally

  25. Virus Classification Based on Q-Vectors (2019), Communications in Information and Systems, Volume 19, Number 1, 81-94, DOI: http://dx.doi.org/10.4310/CIS.2019.v19.n1.a5, with Hui Zheng, Rong L. He and Stephen S.-T. Yau

  26. A Review on Probabilistic Models Used in Microbiome Studies (2018), Communications in Information and Systems, Volume 18, Number 3, 173-191, DOI: http://dx.doi.org/10.4310/CIS.2018.v18.n3.a3, with Ahmed A. Metwally and Hani Aldirawi. ResearchGate

  27. Comparisons of Classification Methods for Viral Genomes and Protein Families using Alignment-free Vectorization (2018), Statistical Applications in Genetics and Molecular Biology, Volume 17, Issue 4, doi:10.1515/sagmb-2018-0004, with Hsin-Hsiung Huang, Shuai Hao, and Saul Alarcon. ResearchGate

  28. The Association between Outpatient Follow-up Visits and All-Cause Non-Elective 30-Day Readmissions: A Retrospective Observational Cohort Study (2018), PLoS ONE 13(7): e0200691, doi:10.1371/journal.pone.0200691, with Liping Tong, Tim Arnold, Xinyong Tian, Cole Erdmann, and Tina Esposito

  29. MetaLonDA: a flexible R-package for identifying time intervals of differentially abundant features in metagenomic longitudinal studies (2018), Microbiome, 6:32, doi:10.1186/s40168-018-0402-y, with Ahmed A. Metwally, Christian Ascoli, Yang Dai, Patricia W. Finn, David L. Perkins

  30. A Prognostic Multi-Gene Signature for Predicting the Risk of Breast Cancer Recurrence Using RNA-Sequencing Data (2018), submitted for publication, with Haipeng Liu, Hsin-Hsiung Huang, and Constance Jeffery

  31. Virus Database and Online Inquiry System Based on Natural Vectors (2017), Evolutionary Bioinformatics, Volume 13, 1-7, doi:10.1177/1176934317746667, with Rui Dong, Hui Zheng, Kun Tian, Shek-Chung Yau, Weiguang Mao, Wenping Yu, Changchuan Yin, Chenglong Yu, Rong Lucy He, and Stephen S.-T. Yau

  32. D-optimal Designs with Ordered Categorical Data (2017), Statistica Sinica, 27, 1879-1902, doi:10.5705/ss.202016.0210, with Liping Tong and Abhyuday Mandal. arXiv

  33. A 20-Year Multi-Followup Longitudinal Study Assessing Whether Antipsychotic Medications Contribute to Work Functioning in Schizophrenia (2017), Psychiatry Research, Volume 256, Pages 267-274, doi: 10.1016/j.psychres.2017.06.069, with Martin Harrow, Thomas Jobe, and Robert Faull. NCBI

  34. Descriptive Statistics of the Genome: Phylogenetic Classification of Viruses (2016), Journal of Computational Biology, 23, 810-820, doi: 10.1089/cmb.2013.0132, with Troy Hernandez. arXiv

  35. Optimal Designs for 2^k Factorial Experiments with Binary Response (2016), Statistica Sinica, 26, 385-411, doi: 10.5705/ss.2013.265, with Abhyuday Mandal and Dibyen Majumdar. arXiv

  36. D-optimal Factorial Designs under Generalized Linear Models (2015), Communications in Statistics - Simulation and Computation, Volume 44, Issue 9, 2264-2277, doi: 10.1080/03610918.2013.815773, with Abhyuday Mandal. arXiv

  37. Ebolavirus Classification Based on Natural Vectors (2015), DNA and Cell Biology, Volume 34, Number 6, 418-428, doi: 10.1089/dna.2014.2678, with Hui Zheng, Changchuan Yin, Tung Hoang, Rong Lucy He, and Stephen S.-T. Yau

  38. Global Comparison of Multiple-segmented Viruses in 12-dimensional Genome Space (2014), Molecular Phylogenetics and Evolution, Volume 81, 29-36, doi: 10.1016/j.ympev.2014.08.003, with Hsin-Hsiung Huang, Chenglong Yu, Hui Zheng, Troy Hernandez, Shek-Chung Yau, Rong Lucy He, and Stephen S.-T. Yau

  39. Analytic Solutions for D-optimal Factorial Designs under Generalized Linear Models (2014), Electronic Journal of Statistics, Vol. 8, 1322-1344, doi: 10.1214/14-EJS926, with Liping Tong and Hans W. Volkmer

  40. DFA7, a New Method to Distinguish between Intron-Containing and Intronless Genes (2014), PLoS ONE 9(7):e101363, doi: 10.1371/journal.pone.0101363, with Chenglong Yu, Mo Deng, Lu Zheng, Rong L He, and Stephen S.-T. Yau

  41. Comparing Logistic Regression, Support Vector Machines and Permanental Classification Methods in Predicting Hypertension (2014), BMC Proceedings 2014, Vol. 8, Suppl. 1:S96, doi: 10.1186/1753-6561-8-S1-S96, with Hsin-Hsiung Huang and Tu Xu

  42. The Card Game 24 and Its Application to Math Education (2014), International Journal of Mathematical Education in Science and Technology, Volume 45, Issue 4, 624-633, doi: 10.1080/0020739X.2013.868544, with Liping Tong, Xue Han, and Loren Velasquez

  43. Cluster-Based Regularized Sliced Inverse Regression for Forecasting Macroeconomic Variables (2014), Journal of Systems Science and Complexity, Volume 27, Issue 1, 75-91, doi: 10.1007/s11424-014-3281-8, with Yue Yu and Zhihong Chen. arXiv

  44. Outperformance Portfolio Optimization via the Equivalence of Pure and Randomized Hypothesis Testing (2013), Finance and Stochastics, Vol. 17, No. 4, 839-870, doi: 10.1007/s00780-013-0213-8, with Tim Leung and Qingshuo Song. arXiv

  45. Real-time Street Parking Availability Estimation (2013), 2013 IEEE 14th International Conference on Mobile Data Management (IEEE MDM 2013), Vol. 1, 16-25, doi: 10.1109/MDM.2013.12, with Bo Xu, Ouri Wolfson, Leon Stenneth, Philip S. Yu, and Peter C. Nelson. ResearchGate

  46. Real Time Classification of Viruses in 12 Dimensions (2013), PLoS ONE 8(5): e64328. doi: 10.1371/journal.pone.0064328, with Chenglong Yu, Troy Hernandez, Hui Zheng, Shek-Chung Yau, Hsin-Hsiung Huang, Rong Lucy He, and Stephen S.-T. Yau

  47. Classification based on a permanental process with cyclic approximation (2012), Biometrika, Vol. 99, No. 4, 775-786, doi: 10.1093/biomet/ass047, with Klaus Miescke and Peter McCullagh. arXiv, R code

  48. Optimal Designs for Two-Level Factorial Experiments with Binary Response (2012), Statistica Sinica, Vol. 22, No. 2, 885-907, doi: 10.5705/ss.2010.080, with Abhyuday Mandal and Dibyen Majumdar. arXiv, Supplementary Materials

  49. Generalized Hypothesis Testing and Maximizing the Success Probability in Financial Markets (2011), to appear in Proceedings of 2011 International Conference on Business Intelligence and Financial Engineering (ICBIFE 2011), with Tim Leung and Qingshuo Song

  50. Comparison of SNP-based and Gene-based Association Studies in Detecting Rare Variants Using Unrelated Individuals (2011), BMC Proceedings 2011, Vol. 5, Suppl. 9:S41, doi: 10.1186/1753-6561-5-S9-S41, with Liping Tong, Bamidele Tayo, and Richar S Cooper

  51. On the Continuity of Stochastic Exit Time Control Problems (2010), Stochastic Analysis and Applications, Vol. 29, No. 1, 48-60, doi: 10.1080/07362994.2011.532020, with Erhan Bayraktar and Qingshuo Song. arXiv

  52. Sliced Inverse Moment Regression Using Weighted Chi-Squared Tests for Dimension Reduction (2010), Journal of Statistical Planning and Inference, Vol. 140, No. 11, 3121-3131, doi: 10.1016/j.jspi.2010.04.015, with Zhishen Ye. arXiv, R code, data

  53. Efficient Calculation of P-value and Power for Quadratic Form Statistics in Multilocus Association Testing (2010), Annals of Human Genetics, Vol. 74, No. 3, 275-285, doi: 10.1111/j.1469-1809.2010.00574.x, with Liping Tong and Richard S. Cooper. arXiv, R code

  54. How Many Clusters (2008), Bayesian Analysis, Vol. 3, No. 1, 101-120, doi: 10.1214/08-BA304, with Peter McCullagh

  55. Stochastic Classification Models (2006), Proceedings of the International Congress of Mathematicians (Madrid, 2006), Vol. III, 669-686, with Peter McCullagh

  56. Efficient Subset for Portfolio Selection without Short Selling (2003), Acta Mathematicae Applicatae Sinica (Chinese Series) , Vol.26, No.2, 286-299, with Shuzhong Shi

  57. Efficient Subset for Portfolio Selection (2002), Acta Mathematicae Applicatae Sinica (Chinese Series) , Vol.25, No.1, 176-186, with Shuzhong Shi

  58. Classification of Portfolio Frontiers and Efficient Subset for Portfolio Selection (2001), Mathematics in Economics (Chinese) , Vol.18, No.1, 8-18, with Shuzhong Shi

  59. Petri Net Model for Scheduling Overhead Traveling Cranes and Smelting Furnaces (1996), Mathematics in Practice and Theory (Chinese) , Vol.26, No.1, 61-65, with Hui Ling and Dehua Xiong

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