Jie Yang - Publications and Manuscripts

Last update: 02/13/2018

  1. MetaLonDA: a flexible R-package for identifying time intervals of differentially abundant features in metagenomic longitudinal studies (2018), Microbiome, 6:32, doi:10.1186/s40168-018-0402-y, with Ahmed A. Metwally, Christian Ascoli, Yang Dai, Patricia W. Finn, David L. Perkins

  2. A Prognostic Multi-Gene Signature for Predicting the Risk of Breast Cancer Recurrence Using RNA-Sequencing Data (2018), submitted for publication, with Haipeng Liu, Hsin-Hsiung Huang, and Constance Jeffery

  3. Comparisons of Classification Methods for Viral Genomes and Protein Families using Alignment-free Vectorization (2018), submitted for publication, with Hsin-Hsiung Huang, Shuai Hao, and Saul Alarcon

  4. The Association between Outpatient Follow-up Visits and All-Cause Non-Elective 30-Day Readmissions: A Retrospective Observational Cohort Study (2018), submitted for publication, with Liping Tong, Tim Arnold, Xinyong Tian, Cole Erdmann, and Tina Esposito

  5. Virus Database and Online Inquiry System Based on Natural Vectors (2017), Evolutionary Bioinformatics, Volume 13, 1-7, doi:10.1177/1176934317746667, with Rui Dong, Hui Zheng, Kun Tian, Shek-Chung Yau, Weiguang Mao, Wenping Yu, Changchuan Yin, Chenglong Yu, Rong Lucy He, and Stephen S.-T. Yau

  6. D-optimal Designs with Ordered Categorical Data (2017), Statistica Sinica, 27, 1879-1902, doi:10.5705/ss.202016.0210, with Liping Tong and Abhyuday Mandal. arXiv

  7. D-optimal Designs for Multinomial Logistic Models (2017), submitted for publication, with Xianwei Bu and Dibyen Majumdar

  8. A 20-Year Multi-Followup Longitudinal Study Assessing Whether Antipsychotic Medications Contribute to Work Functioning in Schizophrenia (2017), Psychiatry Research, Volume 256, Pages 267-274, doi: 10.1016/j.psychres.2017.06.069, with Martin Harrow, Thomas Jobe, and Robert Faull

  9. An Affine-Transformation Invariant Bayesian Cluster Process with Split-Merge Gibbs Sampler (2016), submitted for publication, with Hsin-Hsiung Huang

  10. Descriptive Statistics of the Genome: Phylogenetic Classification of Viruses (2016), Journal of Computational Biology, 23, 810-820, doi: 10.1089/cmb.2013.0132, with Troy Hernandez. arXiv

  11. Optimal Designs for 2^k Factorial Experiments with Binary Response (2016), Statistica Sinica, 26, 385-411, doi: 10.5705/ss.2013.265, with Abhyuday Mandal and Dibyen Majumdar. arXiv

  12. D-optimal Factorial Designs under Generalized Linear Models (2015), Communications in Statistics - Simulation and Computation, Volume 44, Issue 9, 2264-2277, doi: 10.1080/03610918.2013.815773, with Abhyuday Mandal. arXiv

  13. Ebolavirus Classification Based on Natural Vectors (2015), DNA and Cell Biology, Volume 34, Number 6, 418-428, doi: 10.1089/dna.2014.2678, with Hui Zheng, Changchuan Yin, Tung Hoang, Rong Lucy He, and Stephen S.-T. Yau

  14. Global Comparison of Multiple-segmented Viruses in 12-dimensional Genome Space (2014), Molecular Phylogenetics and Evolution, Volume 81, 29-36, doi: 10.1016/j.ympev.2014.08.003, with Hsin-Hsiung Huang, Chenglong Yu, Hui Zheng, Troy Hernandez, Shek-Chung Yau, Rong Lucy He, and Stephen S.-T. Yau

  15. Analytic Solutions for D-optimal Factorial Designs under Generalized Linear Models (2014), Electronic Journal of Statistics, Vol. 8, 1322-1344, doi: 10.1214/14-EJS926, with Liping Tong and Hans W. Volkmer

  16. DFA7, a New Method to Distinguish between Intron-Containing and Intronless Genes (2014), PLoS ONE 9(7):e101363, doi: 10.1371/journal.pone.0101363, with Chenglong Yu, Mo Deng, Lu Zheng, Rong L He, and Stephen S.-T. Yau

  17. Comparing Logistic Regression, Support Vector Machines and Permanental Classification Methods in Predicting Hypertension (2014), BMC Proceedings 2014, Vol. 8, Suppl. 1:S96, doi: 10.1186/1753-6561-8-S1-S96, with Hsin-Hsiung Huang and Tu Xu

  18. The Card Game 24 and Its Application to Math Education (2014), International Journal of Mathematical Education in Science and Technology, Volume 45, Issue 4, 624-633, doi: 10.1080/0020739X.2013.868544, with Liping Tong, Xue Han, and Loren Velasquez

  19. Cluster-Based Regularized Sliced Inverse Regression for Forecasting Macroeconomic Variables (2014), Journal of Systems Science and Complexity, Volume 27, Issue 1, 75-91, doi: 10.1007/s11424-014-3281-8, with Yue Yu and Zhihong Chen. arXiv

  20. Outperformance Portfolio Optimization via the Equivalence of Pure and Randomized Hypothesis Testing (2013), Finance and Stochastics, Vol. 17, No. 4, 839-870, doi: 10.1007/s00780-013-0213-8, with Tim Leung and Qingshuo Song. arXiv

  21. Real-time Street Parking Availability Estimation (2013), 2013 IEEE 14th International Conference on Mobile Data Management (IEEE MDM 2013), Vol. 1, 16-25, doi: 10.1109/MDM.2013.12, with Bo Xu, Ouri Wolfson, Leon Stenneth, Philip S. Yu, and Peter C. Nelson

  22. Real Time Classification of Viruses in 12 Dimensions (2013), PLoS ONE 8(5): e64328. doi: 10.1371/journal.pone.0064328, with Chenglong Yu, Troy Hernandez, Hui Zheng, Shek-Chung Yau, Hsin-Hsiung Huang, Rong Lucy He, and Stephen S.-T. Yau

  23. Classification based on a permanental process with cyclic approximation (2012), Biometrika, Vol. 99, No. 4, 775-786, doi: 10.1093/biomet/ass047, with Klaus Miescke and Peter McCullagh. arXiv, R code

  24. Optimal Designs for Two-Level Factorial Experiments with Binary Response (2012), Statistica Sinica, Vol. 22, No. 2, 885-907, doi: 10.5705/ss.2010.080, with Abhyuday Mandal and Dibyen Majumdar. arXiv, Supplementary Materials

  25. Generalized Hypothesis Testing and Maximizing the Success Probability in Financial Markets (2011), to appear in Proceedings of 2011 International Conference on Business Intelligence and Financial Engineering (ICBIFE 2011), with Tim Leung and Qingshuo Song

  26. Comparison of SNP-based and Gene-based Association Studies in Detecting Rare Variants Using Unrelated Individuals (2011), BMC Proceedings 2011, Vol. 5, Suppl. 9:S41, doi: 10.1186/1753-6561-5-S9-S41, with Liping Tong, Bamidele Tayo, and Richar S Cooper

  27. On the Continuity of Stochastic Exit Time Control Problems (2010), Stochastic Analysis and Applications, Vol. 29, No. 1, 48-60, doi: 10.1080/07362994.2011.532020, with Erhan Bayraktar and Qingshuo Song. arXiv

  28. Sliced Inverse Moment Regression Using Weighted Chi-Squared Tests for Dimension Reduction (2010), Journal of Statistical Planning and Inference, Vol. 140, No. 11, 3121-3131, doi: 10.1016/j.jspi.2010.04.015, with Zhishen Ye. arXiv, R code, data

  29. Efficient Calculation of P-value and Power for Quadratic Form Statistics in Multilocus Association Testing (2010), Annals of Human Genetics, Vol. 74, No. 3, 275-285, doi: 10.1111/j.1469-1809.2010.00574.x, with Liping Tong and Richard S. Cooper. arXiv, R code

  30. How Many Clusters (2008), Bayesian Analysis, Vol. 3, No. 1, 101-120, doi: 10.1214/08-BA304, with Peter McCullagh

  31. Stochastic Classification Models (2006), Proceedings of the International Congress of Mathematicians (Madrid, 2006), Vol. III, 669-686, with Peter McCullagh

  32. Efficient Subset for Portfolio Selection without Short Selling (2003), Acta Mathematicae Applicatae Sinica (Chinese Series) , Vol.26, No.2, 286-299, with Shuzhong Shi

  33. Efficient Subset for Portfolio Selection (2002), Acta Mathematicae Applicatae Sinica (Chinese Series) , Vol.25, No.1, 176-186, with Shuzhong Shi

  34. Classification of Portfolio Frontiers and Efficient Subset for Portfolio Selection (2001), Mathematics in Economics (Chinese) , Vol.18, No.1, 8-18, with Shuzhong Shi

  35. Petri Net Model for Scheduling Overhead Traveling Cranes and Smelting Furnaces (1996), Mathematics in Practice and Theory (Chinese) , Vol.26, No.1, 61-65, with Hui Ling and Dehua Xiong

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