Does preprocessing

Usage

mgrastPreprocessing(file_in, file_out = "preprocessed_data", produce_fig = FALSE, image_out = "my_boxplots", raw_data_boxplot_title = "raw data", centered_data_boxplot_title = "log2(x+1) & centered per sample, scaled 0 to 1 over all samples", figure_width = 950, figure_height = 1000, figure_res = NA)

Arguments

Examples

##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.

## The function is currently defined as
function (file_in, file_out = "preprocessed_data", produce_fig = FALSE, 
    image_out = "my_boxplots", raw_data_boxplot_title = "raw data", 
    centered_data_boxplot_title = "log2(x+1) & centered per sample, scaled 0 to 1 over all samples", 
    figure_width = 950, figure_height = 1000, figure_res = NA) 
{
    suppressPackageStartupMessages(library(Cairo))
  }